Welcome
Bordeaux Proteome has been a CNRS UAR 2046 (Research Support and Research Unit) since January 2026. It is a leading scientific and technological platform in proteomics and mass spectrometry. Open to both academic and private-sector communities, Bordeaux Proteome provides expertise, state-of-the-art equipment and tailored services to support research, development and innovation projects.
Based on innovative technologies and methodologies and a state-of-the-art instrument suite, the Bordeaux Proteome UAR offers services in protein analysis using mass spectrometry and associated separation techniques.
A complete service offer integrating the identification, characterization and quantification / differential analysis of proteins is offered by the platform.
Depuis 2015, Bordeaux Proteome est certifiée ISO 9001 et NF X 50-900. Le Système de Management de la Qualité certifié concerne nos activités : Recherche, développement technologique et expertise en spectrométrie de masse et protéomique.
Our expertise
- Identification of proteins in complex mixtures.
- Quantitation and measurement of protein differential expression with / without labeling
- Characterization of co/post-translational modifications
- de novo sequencing
- Protein partners identification (Interactomics, protein complexes).
Our services
One facility
One organization
Several activities
Differential proteomics
Biomarkers identification
Interactomics
PTMs modifications
Deep Proteome
Clinical cohorts
Multi-omic analysis (proteins, lipids, polysaccharides)
Trace analysis
Taxonomic identification
de novo sequencing
Protein modifications
Spatial distribution on tissues
multi-omics
multi-modal
Exogeneous compound quantification using MALDI MSI
MSI data processing
Glycosylation profiling
Protein complexes
Protein-protein/ligand interactions
Crosslinking
HDX-MS
Affinity-based protein profiling
LiP-MS (limited proteolysis)
Top-Down MS protein characterization
Our services
| Sample Preparation | Protein and peptide analysis | Data analysis | R&D expertises |
|---|---|---|---|
| For Mass Spectrometry analysis | By high-resolution mass spectrometry | Bio-informatic treatment | The M3S team from CBMN |
| Electrophoretic or chromatographic separation Protein enrichment or depletion Peptide sub-species enrichment (phosphoproteomics, glycosylation …) Various proteolysis solutions: in gel, in solution, multi-enzyme, trace studies … | High resolution MS and nanoLC-MS/MS analyzes (Orbitrap) Fast or resolving chromatographic gradients CID, HCD, ETD, EThcD, UVPD fragmentations | Software and hardware dedicated to identification, quantitation and characterization of proteins Chimerys, a database search algorithm based on Artificial Intelligence (AI) Omics data integration with the CBiB (bioinformatic cenetr from Bordeaux): statistical validation, Go terms enrichment, visualisation tools and result interpretation, proteome functional annotation | Structural analysis by isotope exchange or cross-linking: conformational study, interaction, epitope mapping MSI (Mass Spectrometry Imaging) of lipids, metabolits, peptides/proteins Intact protein analysis by Top-Down MS Glycoproteins / glycopeptides analysis Traces and ultra traces analysis |
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